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Notational conventions · Common abbreviations · Getting started · ICM Scripting Tutorials · Reference Guide · ICM command line options · Command line editing Flexible ligand docking with the ICM software uses Monte Carlo simulations to . box dimensions were subsequently adjusted manually after visual inspection of .. Maxim Totrov, Molsoft L.L.C. 11199 Sorrento Valley Road, S209, San Diego,Some of the commands or functions described in this manual belong to specific modules and are not available in the ICM-main program. Note that the Molsoft Convert PDB to ICM Object, HTML. Superimpose Proteins Working with the ICM Interactive 3D Ligand Editor, HTML · Reference Guide. Ligand Docking 3.2 ICM-Browser-Pro Reference Guide. 3.3 ActiveICM Reference Guide - Create 3D Molecular Documents for the Web 3.5 ICM-Chemist-Pro Reference Guide. one of a few fast-access internal functions listed below, e.g. function="Sqrt"; one of a thousand built-in ICM-shell functions (described in this manual), e.g. ICM-Pro empowers a biologist or chemist by providing a high quality protein structure analysis, modeling, and docking desktop software environment. You have The ICM Suite of Software provides an easy to use general environment for a biologist or chemist who is curious about protein structure. In just a few seconds 19 Mar 2019 This section of the ICM manual contains answers to some popular questions and example scripts for different tasks. We assume that you now 4 Aug 2010 Getting Started: Download and Install ICM-Browser and ActiveICM. Download ICM-Browser Distribution. Download. Install ICM-Browser.